Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| BRCA | rs62096471 | chr18:44643814 | T/C | 2.12E-5 | 1022 | 21.57 | 22.2 | 18.13 | KM Plot |
| BRCA | rs62096474 | chr18:44647504 | G/A | 1.95E-5 | 1020 | 21.7 | 22.2 | 18.13 | KM Plot |
| BRCA | rs62096476 | chr18:44658621 | T/C | 2.03E-5 | 1022 | 21.73 | 22.2 | 18.03 | KM Plot |
| BRCA | rs62096478 | chr18:44662409 | A/G | 2.03E-5 | 1022 | 21.73 | 22.2 | 18.03 | KM Plot |
| BRCA | rs62118799 | chr2:9513296 | C/A | 1.28E-7 | 1012 | 21.7 | 21.68 | 12.57 | KM Plot |
| BRCA | rs62118802 | chr2:9521563 | G/A | 9.53E-8 | 1017 | 21.57 | 21.68 | 12.57 | KM Plot |
| BRCA | rs62206288 | chr20:30471131 | G/A | 9.67E-9 | 1006 | 21.17 | 23.37 | 10.03 | KM Plot |
| BRCA | rs62449700 | chr7:54772494 | T/C | 7.68E-6 | 1026 | 21.43 | 25.13 | 3.97 | KM Plot |
| BRCA | rs62449701 | chr7:54773070 | C/A | 7.68E-6 | 1026 | 21.43 | 25.13 | 3.97 | KM Plot |
| BRCA | rs62449724 | chr7:54774838 | A/G | 7.68E-6 | 1026 | 21.43 | 25.13 | 3.97 | KM Plot |
| BRCA | rs62449727 | chr7:54778735 | G/A | 7.8E-6 | 1028 | 21.43 | 25.13 | 3.97 | KM Plot |
| BRCA | rs62449733 | chr7:54785588 | A/G | 7.94E-6 | 1027 | 21.43 | 25.13 | 3.97 | KM Plot |
| BRCA | rs62449734 | chr7:54786159 | G/A | 8.13E-6 | 1026 | 21.43 | 25.13 | 3.97 | KM Plot |
| BRCA | rs62449736 | chr7:54796913 | C/T | 8.65E-6 | 1027 | 21.43 | 25.02 | 8.07 | KM Plot |
| BRCA | rs62449737 | chr7:54799938 | C/T | 8.65E-6 | 1027 | 21.43 | 25.02 | 8.07 | KM Plot |